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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140547164_140549335_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140547164 - 140549335
Intron Length:
2172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGAACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAACT
Flanking Amino Acid:
AALTVSQRRKLAKPAFPSFI
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
62.1
0.27
1
56.2
43.7
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
75.6
0.88
1.3
88.52
36.3

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000037790
140522860 - 140603660
80801
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943
ENSAPLT00000026849
140522860 - 140599939
77080