Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140547164_140558055_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140547164 - 140558055

Intron Length:

10892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTCGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAG

U12 Branch Point Sequence:

TTGTTAGGAGTG

Flanking Amino Acid:

AALTVSQRRKPRKYRLGMLD

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

72.3

39.5

Major BPS

57.4

0.18

1.7

57.4

49.1

Major PPT

86.3

0.82

0.6

84.1

23.8

Minor 5ss

38.3

-1.3

3.1

50.7

46.2

Minor BPS

36.6

-1.1

2.2

44.6

41.9

Associated Gene:

Gene:

PAN3

Ensembl Gene ID:

ENSAPLG00000006496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019882

140522860 - 140602665

79806