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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140547164_140566740_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140547164 - 140566740
Intron Length:
19577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
AALTVSQRRKTPNPTASEFI
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
72.3
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
38.3
-1.3
3.1
50.7
46.2
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020891
140522860 - 140602665
79806