Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140549399_140558055_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140549399 - 140558055

Intron Length:

8657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTCGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAG

U12 Branch Point Sequence:

TTGTTAGGAGTG

Flanking Amino Acid:

DLEDRYNTVLPRKYRLGMLD

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

57.4

0.18

1.7

57.4

49.1

Major PPT

86.3

0.82

0.6

84.1

23.8

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

36.6

-1.1

2.2

44.6

41.9

Associated Gene:

Gene:

PAN3

Ensembl Gene ID:

ENSAPLG00000006496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025572

140522860 - 140602665

79806

ENSAPLT00000018760

140522723 - 140603122

80400

ENSAPLT00000006749

140522860 - 140602665

79806

ENSAPLT00000037790

140522860 - 140603660

80801

ENSAPLT00000026849

140522860 - 140599939

77080