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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140558218_140561819_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

140558218 - 140561819

Intron Length:

3602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

GTAACCATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

CTTTCTGTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

67.4

0.39

58.6

41.6

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

64.7

0.44

77.59

Associated Gene:

Gene:

PAN3

Ensembl Gene ID:

ENSAPLG00000006496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046164

140549888 - 140602665

52778