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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140558218_140566740_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140558218 - 140566740
Intron Length:
8523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
WNRVTENNLQTPNPTASEFI
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000026849
140522860 - 140599939
77080
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000037790
140522860 - 140603660
80801