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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140566760_140566837_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140566760 - 140566837
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCTCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAT
U12 Branch Point Sequence:
TCCCAGTCAAGT
Flanking Amino Acid:
NNLQTPNPTATLFSHPSMGS
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
58.9
0.22
1.4
61.7
43.1
Major PPT
66.5
0.37
1
63.7
37.3
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
38.2
-0.8
2.4
54.17
47

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025572
140522860 - 140602665
79806