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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140566892_140574287_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140566892 - 140574287
Intron Length:
7396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGATCAACA
Flanking Amino Acid:
GSPATAGLAPGMSLSAGSSP
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.3
0.55
1
79.5
32.9
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
50.3
0.01
2.2
71.61
40.1

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020891
140522860 - 140602665
79806
ENSAPLT00000037790
140522860 - 140603660
80801
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000026849
140522860 - 140599939
77080
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000046164
140549888 - 140602665
52778