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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140575180_140575794_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140575180 - 140575794
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTGACATAATT
Flanking Amino Acid:
SFFMADELRQELINRHLITM
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.8
0.78
0.8
82
34.7
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
51.7
0.13
1.9
73.61
43.4

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000026849
140522860 - 140599939
77080
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000046164
140549888 - 140602665
52778
ENSAPLT00000020891
140522860 - 140602665
79806
ENSAPLT00000037790
140522860 - 140603660
80801