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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140577134_140577392_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140577134 - 140577392
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTTTTAAACC
Flanking Amino Acid:
DLPYCLRRIHGFRLVNTKCM
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.8
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
0.9
69.7
41.5
Minor 5ss
27.5
-2.6
2.7
28.2
37.3
Minor BPS
58.4
0.24
1.7
66.28
39.9

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000026849
140522860 - 140599939
77080
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000046164
140549888 - 140602665
52778
ENSAPLT00000020891
140522860 - 140602665
79806
ENSAPLT00000037790
140522860 - 140603660
80801