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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140577510_140577603_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140577510 - 140577603
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTATTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GAGTTAGTAATT
Flanking Amino Acid:
VFTTKAFGEHSLVFAYDFHA
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.2
0.63
1
82.8
32.3
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
45.6
-0.2
2.2
62.44
41.8

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000026849
140522860 - 140599939
77080
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000046164
140549888 - 140602665
52778
ENSAPLT00000020891
140522860 - 140602665
79806
ENSAPLT00000037790
140522860 - 140603660
80801
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943