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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14058698_14059192_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14058698 - 14059192
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CTTCCTTTCACA
Flanking Amino Acid:
GKSYRQLRSFRPLLFQTSEH
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
81
0.7
0.9
72.6
42.2
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
61.3
0.35
1.8
72.26
40.2

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007581
14056139 - 14230123
173985
ENSAPLT00000007578
14048812 - 14230123
181312