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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140587997_140588435_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140587997 - 140588435

Intron Length:

439

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTAT

5'SS Class:

strong_major

3'SS Sequence:

CTCGTTCCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

ACTTACTGACGC

Flanking Amino Acid:

PTKILVTGKTRLRVNCVGIF

Intron Amino Acid Position:

683

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

32.3

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

62.9

0.29

62.8

32.2

Minor 5ss

37.8

-1.4

3.5

49.2

Minor BPS

43.5

-0.5

2.1

54.38

43.4

Associated Gene:

Gene:

PAN3

Ensembl Gene ID:

ENSAPLG00000006496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018760

140522723 - 140603122

80400

ENSAPLT00000026849

140522860 - 140599939

77080

ENSAPLT00000006749

140522860 - 140602665

79806

ENSAPLT00000025572

140522860 - 140602665

79806

ENSAPLT00000046164

140549888 - 140602665

52778

ENSAPLT00000020891

140522860 - 140602665

79806

ENSAPLT00000037790

140522860 - 140603660

80801

ENSAPLT00000019882

140522860 - 140602665

79806

ENSAPLT00000036610

140522723 - 140602665

79943