About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140595500_140598455_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140595500 - 140598455
Intron Length:
2956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GATACTTTAATA
Flanking Amino Acid:
NDVIEEDLAKEVQNGRLFRL
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
80
0.75
1
78.6
31
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
68.3
0.57
1.2
70.17
35.8

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006749
140522860 - 140602665
79806
ENSAPLT00000025572
140522860 - 140602665
79806
ENSAPLT00000046164
140549888 - 140602665
52778
ENSAPLT00000020891
140522860 - 140602665
79806
ENSAPLT00000037790
140522860 - 140603660
80801
ENSAPLT00000019882
140522860 - 140602665
79806
ENSAPLT00000036610
140522723 - 140602665
79943
ENSAPLT00000018760
140522723 - 140603122
80400
ENSAPLT00000026849
140522860 - 140599939
77080