Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140599396_140602524_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140599396 - 140602524

Intron Length:

3129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACACTGT

5'SS Class:

major

3'SS Sequence:

ATTCTTGTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTTATTTTATCT

Flanking Amino Acid:

LSHIISCLNKLDAGVPEKIS

Intron Amino Acid Position:

871

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

63.2

43.9

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

82.4

0.73

0.9

76.3

37.2

Minor 5ss

43.9

-0.7

3.3

65.1

46.1

Minor BPS

65.8

0.57

1.6

83.94

37.1

Associated Gene:

Gene:

PAN3

Ensembl Gene ID:

ENSAPLG00000006496

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019882

140522860 - 140602665

79806

ENSAPLT00000046164

140549888 - 140602665

52778

ENSAPLT00000018760

140522723 - 140603122

80400

ENSAPLT00000036610

140522723 - 140602665

79943

ENSAPLT00000006749

140522860 - 140602665

79806

ENSAPLT00000025572

140522860 - 140602665

79806

ENSAPLT00000020891

140522860 - 140602665

79806