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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140620395_140620949_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140620395 - 140620949
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGCAGCTTGATT
Flanking Amino Acid:
RGMEFLSSRKCIHRDLAARN
Intron Amino Acid Position:
1011

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.4
0.73
0.8
77.6
35.5
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
51.3
0.12
1.9
68.28
43

Associated Gene:

Gene:
FLT1
Ensembl Gene ID:
ENSAPLG00000006689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027530
140607629 - 140714774
107146