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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140621627_140623149_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140621627 - 140623149
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGATGTTGCACT
Flanking Amino Acid:
SKRNFFCASKDSSLQGELMK
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
79
0.72
1
69
38.9
Major PPT
73.7
0.53
1
74.5
34
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
44.9
-0.3
2.2
66.23
44.3

Associated Gene:

Gene:
FLT1
Ensembl Gene ID:
ENSAPLG00000006689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007133
140608728 - 140714774
106047
ENSAPLT00000027530
140607629 - 140714774
107146