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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140624127_140627336_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
140624127 - 140627336
Intron Length:
3210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTGCATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCACATTGATT
Flanking Amino Acid:
CRIVAVKMLKEGATASEYKA
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
65.8
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
76.9
36.3
Minor 5ss
57.7
0.26
2
70.7
39.7
Minor BPS
59.6
0.38
1.7
77.03
39.6

Associated Gene:

Gene:
FLT1
Ensembl Gene ID:
ENSAPLG00000006689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027530
140607629 - 140714774
107146
ENSAPLT00000007133
140608728 - 140714774
106047