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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140640670_140642452_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140640670 - 140642452
Intron Length:
1783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTCACA
Flanking Amino Acid:
KNHEEIHQESGIILGPGSRM
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.7
0.78
0.8
79.7
32
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
55.6
0.17
1.9
73.69
37.9

Associated Gene:

Gene:
FLT1
Ensembl Gene ID:
ENSAPLG00000006689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007133
140608728 - 140714774
106047
ENSAPLT00000027530
140607629 - 140714774
107146