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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140682503_140684056_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140682503 - 140684056
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
VQMTWTYPGQTKKRGSITQR
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
FLT1
Ensembl Gene ID:
ENSAPLG00000006689
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027530
140607629 - 140714774
107146
ENSAPLT00000007133
140608728 - 140714774
106047