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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14069349_14070165_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14069349 - 14070165
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATTT
Flanking Amino Acid:
AEQTITAALKTVHDLMGSAV
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.5
28.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.9
0.83
0.7
86.2
26.5
Minor 5ss
32.1
-2
3.1
40.5
45.7
Minor BPS
75.6
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007578
14048812 - 14230123
181312
ENSAPLT00000007581
14056139 - 14230123
173985