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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14070229_14071596_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14070229 - 14071596
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCTTG
5'SS Class:
major
3'SS Sequence:
TTAACATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATTCCTTTAACA
Flanking Amino Acid:
LYKLHQSVLKVIANQSSFPA
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
42.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
72.7
0.51
0.9
66.8
39.1
Minor 5ss
40.6
-1
3.3
54.5
49.7
Minor BPS
80
0.94
1
83.43
29.9

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007581
14056139 - 14230123
173985
ENSAPLT00000007578
14048812 - 14230123
181312