About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140748666_140749581_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140748666 - 140749581
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGGCCT
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATCCTCACTT
Flanking Amino Acid:
VLSHGGGAALDSRGAASLLK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
55.7
42.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.3
0.7
0.9
72.6
42.4
Minor 5ss
26.7
-2.7
3.5
35.7
42.2
Minor BPS
56.8
0.29
1.8
74.53
42.2

Associated Gene:

Gene:
POMP
Ensembl Gene ID:
ENSAPLG00000008213
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008520
140714795 - 140755632
40838