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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140749474_140749581_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140749474 - 140749581
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATCCTCACTT
Flanking Amino Acid:
GLRDSRGAASLLK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
70.8
41
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.3
0.7
0.9
72.6
42.4
Minor 5ss
34
-1.8
2.9
43.2
43.8
Minor BPS
56.8
0.29
1.8
74.53
42.2

Associated Gene:

Gene:
POMP
Ensembl Gene ID:
ENSAPLG00000008213
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048351
140749146 - 140755632
6487