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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140760625_140762581_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140760625 - 140762581
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATCT
Flanking Amino Acid:
GFCLIPLGALCWLLCTSWNG
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
79.3
0.66
0.9
73
37.4
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
63
0.49
1.7
78.81
43.9

Associated Gene:

Gene:
SLC46A3
Ensembl Gene ID:
ENSAPLG00000008223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008548
140759537 - 140770975
11439