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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140764257_140764578_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140764257 - 140764578
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTGCTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTACTTTTATGT
Flanking Amino Acid:
FAKTTLLMFLVRVPSLFCLM
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.6
0.67
0.9
72.3
37.5
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
49.1
0.01
1.8
69.39
41.8

Associated Gene:

Gene:
SLC46A3
Ensembl Gene ID:
ENSAPLG00000008223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008548
140759537 - 140770975
11439