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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140765453_140770762_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140765453 - 140770762
Intron Length:
5310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
ACACTGTTAACT
Flanking Amino Acid:
KSSPAYIKQKGVQEKTSLFN
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
50.9
0.11
2.1
68.16
42.6

Associated Gene:

Gene:
SLC46A3
Ensembl Gene ID:
ENSAPLG00000008223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008548
140759537 - 140770975
11439