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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140780703_140783419_R

Intron Information:

Intron Rank:
138305
Intron Class:
major
Intron Phase:
Intron Coordinates:
140780703 - 140783419
Intron Length:
2717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTGTTTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.8
0.72
0.8
78.4
34.7
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
45.1
-0.3
1.9
65.22
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021967
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041530
140780441 - 140784675
4235