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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140795543_140798696_R

Intron Information:

Intron Rank:
139882
Intron Class:
major
Intron Phase:
Intron Coordinates:
140795543 - 140798696
Intron Length:
3154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGGAC
U12 Branch Point Sequence:
CTCTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
49.7
-0
1.4
52.4
43.3
Major PPT
80
0.67
0.8
76.7
30.6
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
59
0.28
1.6
66.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022649
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040190
140795491 - 140799887
4397