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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140910874_140920518_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140910874 - 140920518
Intron Length:
9645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAATACAAAATT
Flanking Amino Acid:
APSLYHPDASVDLKKGPCPN
Intron Amino Acid Position:
845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
47.1
-0.1
2
68.31
42.1

Associated Gene:

Gene:
MTUS2
Ensembl Gene ID:
ENSAPLG00000008305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008638
140806385 - 141071629
265245