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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14093491_14095825_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14093491 - 14095825
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTGCTTTATTT
Flanking Amino Acid:
LSSQFQSATDSSMFLKQAFE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
54.9
0.23
1.7
69.31
42.7

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007581
14056139 - 14230123
173985
ENSAPLT00000007578
14048812 - 14230123
181312