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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141019326_141024580_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141019326 - 141024580
Intron Length:
5255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
CTGACCTTGATT
Flanking Amino Acid:
AVTATKLHSPGHPKQRSTTP
Intron Amino Acid Position:
1001

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
83.9
0.76
0.7
80.1
25.3
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
66.8
0.61
1.3
75.42
41.9

Associated Gene:

Gene:
MTUS2
Ensembl Gene ID:
ENSAPLG00000008305
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008638
140806385 - 141071629
265245