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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141083816_141084949_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141083816 - 141084949
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCTTCCCT
Flanking Amino Acid:
IATVTSGAIAAVMAFLFDLK
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.7
29.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.5
0.57
0.7
69.5
24.3
Minor 5ss
33.8
-1.8
3
42.5
44.5
Minor BPS
49.9
0.08
3.7
91.67
38.1

Associated Gene:

Gene:
SLC7A1
Ensembl Gene ID:
ENSAPLG00000008545
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027633
141078689 - 141099233
20545
ENSAPLT00000008911
141078689 - 141099000
20312