Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141089858_141090485_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141089858 - 141090485

Intron Length:

628

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAACC

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

AACTATCCGACT

Flanking Amino Acid:

FAVVIIIILTGLLIFGVKES

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

74.9

33.2

Major BPS

0.42

1.1

57.3

41.7

Major PPT

85.2

0.79

0.8

79.9

32.1

Minor 5ss

34.1

-1.8

44.4

43.1

Minor BPS

41.6

-0.5

1.9

56.27

39.8

Associated Gene:

Gene:

SLC7A1

Ensembl Gene ID:

ENSAPLG00000008545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027633

141078689 - 141099233

20545

ENSAPLT00000008911

141078689 - 141099000

20312