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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141093574_141099096_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
141093574 - 141099096
Intron Length:
5523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GTATAAATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
61
44.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
91.9
0.94
0.6
88.6
20.9
Minor 5ss
32.7
-2
3.4
39.7
40.6
Minor BPS
49.3
0.03
2
73.77
41.7

Associated Gene:

Gene:
SLC7A1
Ensembl Gene ID:
ENSAPLG00000008545
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027633
141078689 - 141099233
20545