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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141141515_141141960_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141141515 - 141141960
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
CTAAGCAAAACT
Flanking Amino Acid:
RETLPEPNSQGQRNREKTGE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
69.9
43.4
Major BPS
70
0.5
1
67
39.8
Major PPT
81.2
0.7
0.8
75.9
32.8
Minor 5ss
44.5
-0.6
3.2
65.1
46.1
Minor BPS
42.8
-0.4
2.3
62.33
47

Associated Gene:

Gene:
UBL3
Ensembl Gene ID:
ENSAPLG00000020134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034536
141141462 - 141150680
9219