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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141142039_141146504_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141142039 - 141146504
Intron Length:
4466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TATTAGTAAATC
Flanking Amino Acid:
RFLHGNVTLGALKLPFGKTT
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
46.4
-0.2
2.4
64.23
41.6

Associated Gene:

Gene:
UBL3
Ensembl Gene ID:
ENSAPLG00000020134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034536
141141462 - 141150680
9219