About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141146592_141150532_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141146592 - 141150532
Intron Length:
3941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TACAACCTAACT
Flanking Amino Acid:
AKHVYDNWPMDWEEEQVSSP
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
64.7
0.37
1
73
31.5
Major PPT
90.2
0.9
0.6
88.3
21.4
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
51.8
0.13
1.9
72.21
43.7

Associated Gene:

Gene:
UBL3
Ensembl Gene ID:
ENSAPLG00000020134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034536
141141462 - 141150680
9219