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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141260748_141261094_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
141260748 - 141261094
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCAGGTTTG
5'SS Class:
major
3'SS Sequence:
CAAAGCCCTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGATAAA
U12 Branch Point Sequence:
AACGTCCCAACC
Flanking Amino Acid:
MKDSPGLQPR
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
68.6
42.2
Major BPS
54.7
0.12
1.2
56.1
37.3
Major PPT
46
-0.2
1.7
47.6
41
Minor 5ss
34.5
-1.8
4.2
52.7
44.8
Minor BPS
43.8
-0.4
1.9
50.49
40

Associated Gene:

Gene:
KATNAL1
Ensembl Gene ID:
ENSAPLG00000003805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028687
141240752 - 141261096
20345