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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141260796_141262779_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141260796 - 141262779
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TTTCTATCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATCATT
Flanking Amino Acid:
VWPPPVPAEHRAPPQIKRPN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.5
0.57
0.9
75.8
32.9
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
58.9
0.36
2
84.42
36.8

Associated Gene:

Gene:
KATNAL1
Ensembl Gene ID:
ENSAPLG00000003805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003902
141240752 - 141270729
29978