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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141262941_141270567_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141262941 - 141270567
Intron Length:
7627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAATT
Flanking Amino Acid:
DPAVKGKWQQVRQELVEEYE
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.3
0.48
1.1
71.9
38.3
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
69.8
0.7
1.6
84.43
36.6

Associated Gene:

Gene:
KATNAL1
Ensembl Gene ID:
ENSAPLG00000003805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003902
141240752 - 141270729
29978