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Intron Name: Anas_platyrhynchos_platyrhynchos_1_141301683_141333844_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

141301683 - 141333844

Intron Length:

32162

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GAG|GTGGAGGAG

5'SS Class:

major

3'SS Sequence:

GCCCTGAGAAGGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

ATGTGCTGAAAG

Flanking Amino Acid:

EDEDDDEEEEEEEHTASLRL

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.9

0.35

1.1

53.3

39.8

Major BPS

0.42

1.1

57.3

41.7

Major PPT

24.8

-1.4

3.2

30.9

34.4

Minor 5ss

21.1

-3.3

3.5

27.2

44.5

Minor BPS

47.8

-0.3

56.1

44.8

Associated Gene:

Gene:

HMGB1

Ensembl Gene ID:

ENSAPLG00000030014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021867

141299203 - 141379240

80038

ENSAPLT00000018889

141299203 - 141349751

50549