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Intron Name: Anas_platyrhynchos_platyrhynchos_1_141342654_141344600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141342654 - 141344600

Intron Length:

1947

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCTG

5'SS Class:

major

3'SS Sequence:

TTTCTCCTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTTAA

U12 Branch Point Sequence:

TAAACTTTAAGA

Flanking Amino Acid:

AAKLKEKYEKDIAAYRAKGK

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.2

64.3

47.1

Major BPS

65.9

0.4

57.6

Major PPT

73.2

0.52

71.9

Minor 5ss

39.9

-1.1

3.4

55.8

48.4

Minor BPS

59.1

0.28

1.7

66.19

Associated Gene:

Gene:

HMGB1

Ensembl Gene ID:

ENSAPLG00000030014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021867

141299203 - 141379240

80038

ENSAPLT00000018889

141299203 - 141349751

50549

ENSAPLT00000004076

141342387 - 141354284

11898