About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141344776_141345735_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141344776 - 141345735
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTTTCATT
Flanking Amino Acid:
FKDPNAPKRPPSAFFLFCSE
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.72
0.8
77.3
31.5
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
52.8
0.17
1.7
71.97
40.1

Associated Gene:

Gene:
HMGB1
Ensembl Gene ID:
ENSAPLG00000030014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004076
141342387 - 141354284
11898
ENSAPLT00000021867
141299203 - 141379240
80038
ENSAPLT00000018889
141299203 - 141349751
50549