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Intron Name: Anas_platyrhynchos_platyrhynchos_1_141345882_141346145_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141345882 - 141346145

Intron Length:

264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

AATTGCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTCATTTTAATT

Flanking Amino Acid:

FSKKCSERWKTMSSKEKGKF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.8

0.56

0.9

66.8

39.6

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

63.4

0.5

1.3

72.43

39.2

Associated Gene:

Gene:

HMGB1

Ensembl Gene ID:

ENSAPLG00000030014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021867

141299203 - 141379240

80038

ENSAPLT00000018889

141299203 - 141349751

50549

ENSAPLT00000004076

141342387 - 141354284

11898