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Intron Name: Anas_platyrhynchos_platyrhynchos_1_141346309_141354273_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141346309 - 141354273

Intron Length:

7965

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTGCTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

AAAGTTGTAAAA

Flanking Amino Acid:

MTQRKSSKMGKGD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

78.3

0.64

0.9

72.2

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

42.2

-0.5

48.19

35.9

Associated Gene:

Gene:

HMGB1

Ensembl Gene ID:

ENSAPLG00000030014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004076

141342387 - 141354284

11898