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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141365493_141377965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
141365493 - 141377965
Intron Length:
12473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTGGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
80.9
0.7
1
79.9
37.7
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
66.3
0.51
1.4
78.29
31.6

Associated Gene:

Gene:
HMGB1
Ensembl Gene ID:
ENSAPLG00000030014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021867
141299203 - 141379240
80038