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Intron Name: Anas_platyrhynchos_platyrhynchos_1_141378110_141379072_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

141378110 - 141379072

Intron Length:

963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTCCA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

AGCTTTTAAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

73.5

37.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

81.6

0.71

0.8

Minor 5ss

34.6

-1.8

2.8

42.9

43.8

Minor BPS

52.3

0.15

1.6

65.71

Associated Gene:

Gene:

HMGB1

Ensembl Gene ID:

ENSAPLG00000030014

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021867

141299203 - 141379240

80038