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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141387130_141397465_R

Intron Information:

Intron Rank:
148778
Intron Class:
major
Intron Phase:
Intron Coordinates:
141387130 - 141397465
Intron Length:
10336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGGTGT
5'SS Class:
major
3'SS Sequence:
TCCTTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACATCAATGAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.5
44.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83
0.74
0.8
80.2
31.8
Minor 5ss
33.4
-1.9
3.5
47.6
47.9
Minor BPS
40.9
-0.8
2.1
43.7
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027523
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044220
141386996 - 141397781
10786