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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141401668_141402235_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141401668 - 141402235
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTCAGTTGA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
TLHMVGYLGKSCNSVEISSS
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
68.7
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
36.7
-1.5
2.7
41.3
39.1
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
USPL1
Ensembl Gene ID:
ENSAPLG00000003991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004085
141401500 - 141411533
10034